Container element of a DNA sample containig information about DNA extraction, PCR amplifications, cloning and sequencing
Tissue from which DNA was extracted
Form of conservation or fixation in which the tissue was available for extraction
Person who carried out DNA extraction
Date of DNA extraction
Method or extraction protocol applied
Method or protocol used for secundary purification of already extracted genomic DNA
Ratio of absorbance at 260 nm and 280 nm used to assess the purity of DNA (mainly proteins, phenol and others)
Ratio of absorbance at 260 nm and 230 nm assessing DNA purity (mostly secundary measure, indicates maily EDTA, carbohydrates, phenol)
DNA concentration value
DNA quality estimation based on agarose gel electrophoresis (average fragment lenght of the DNA sample)
Date when DNA quality parameters were determined
Container element for links to images of the DNA sample (e.g. agarose gel images)
Container element for links to agarose gel images
Link to an DNA sample image (e.g. agarose gel image)
Date until ordering of DNA samples is blocked
Outside person or company which delivered or donated the DNA sample
Container element for infomation of all amplifications
Container element for information related to an individual amplification
Container element for individual amplifications
Date when the amplification was carried out
Person who performed the amplification
Genetic locus or DNA fragment amplified by PCR
Method or protocol used to purify the PCR product
Container element for all DNA sequencings (related to all sequences and sequencing runs of one fragment or locus)
Container element for all sequencing information related to a defined clone of a cloned fragment (contains only one element if the fragment was not cloned)
Container element for amplification primers
Container element for information about the amplification forward primer
Container element for information about the amplification reverse primer
Container element for DNA sequencings
Date when the DNA cloning was carried out
Person or company which performed DNA cloning
Method or protocol used for DNA cloning
Name of the individual DNA clone
Container element for all individual DNA sequencings (related to all sequnecing runs of a defined clone of a cloned fragment)
Container element for information related to an individual sequencing (related to a unique sequencing run)
Consensus sequence derived from all individual sequences
Length of the consensus sequence (number of base pairs)
Link to the chromatogram of the consensus sequence
DNA Barcode sequence (part or 100% of the consensus sequence)
Definite number or ID under which the DNA sequence is deposited in a public database (e.g. GenBank accession number)
Link to the related record in a public database (e.g. link to a GenBank record)
Container element for references to DNA sequences or the consensus sequence
Container element for references to individual DNA sequences or the consensus sequence
Container element for information on individual sequences
Date when the DNA sequence was produced
Person or company which performed the sequencing
Method or protocol used to generate the DNA sequences
Sequence of the individual DNA sequence (A,T,G,C; 5' to 3')
Container element for chromatograms of an individual DNA sequence
Link to the chromatogram of an individual DNA sequence
Container element for all sequencing primers
Container element for an individual sequencing primer
Container element for an reference to DNA sequences or the consensus sequence
Reference to DNA sequences or the consensus sequence
Link to the reference for DNA sequences or the consensus sequence
Container element for information of a sequencing primer
DNA sequence of the sequencing primer (A,T,G,C; 5' to 3')
Name of the sequencing primer
First reference of the sequencing primer
Link to the first reference of the sequencing primer
Container element for information of the amplification forward primer
Name of the forward primer
DNA sequence of the forward primer (5' to 3')
First reference of the forward primer
Link to the first reference of the forward primer
Container element for information about the amplification reverse primer
Name of the reverse primer
DNA sequence of the reverse primer (5' to 3')
First reference of the reverse primer
Link to the first reference of the reverse primer
String, extended with Type attribute
String, extended with direction attribute (e.g. 'forward' or 'reverse')
String, extended with Unit attribute (e.g. ng/µl)