schema location: | http://www.dnabank-network.org/schemas/ABCDDNA/DNA.XSD |
targetNamespace: | http://www.dnabank-network.org/schemas/ABCDDNA |
Elements | Complex types |
DNASample | Amplification |
AmplificationPrimerForward | |
AmplificationPrimerReverse | |
Reference | |
Sequencing | |
SequencingPrimer | |
SingleSequencing | |
StringDirection | |
StringType | |
StringUnit |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
children | Tissue Preservation ExtractionStaff ExtractionDate ExtractionMethod PurificationMethod RatioOfAbsorbance260_280 RatioOfAbsorbance260_230 Concentration Quality QualityCheckDate Images BlockedUntil ProvidedBy Amplifications | ||
annotation |
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||
source | <xs:element name="DNASample"> <xs:annotation> <xs:documentation>Container element of a DNA sample containig information about DNA extraction, PCR amplifications, cloning and sequencing</xs:documentation> </xs:annotation> <xs:complexType> <xs:sequence> <xs:element name="Tissue" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Tissue from which DNA was extracted</xs:documentation> </xs:annotation> </xs:element> <xs:element name="Preservation" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Form of conservation or fixation in which the tissue was available for extraction</xs:documentation> </xs:annotation> </xs:element> <xs:element name="ExtractionStaff" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Person who carried out DNA extraction</xs:documentation> </xs:annotation> </xs:element> <xs:element name="ExtractionDate" type="xs:date" minOccurs="0"> <xs:annotation> <xs:documentation>Date of DNA extraction</xs:documentation> </xs:annotation> </xs:element> <xs:element name="ExtractionMethod" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Method or extraction protocol applied</xs:documentation> </xs:annotation> </xs:element> <xs:element name="PurificationMethod" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Method or protocol used for secundary purification of already extracted genomic DNA</xs:documentation> </xs:annotation> </xs:element> <xs:element name="RatioOfAbsorbance260_280" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Ratio of absorbance at 260 nm and 280 nm used to assess the purity of DNA (mainly proteins, phenol and others)</xs:documentation> </xs:annotation> </xs:element> <xs:element name="RatioOfAbsorbance260_230" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Ratio of absorbance at 260 nm and 230 nm assessing DNA purity (mostly secundary measure, indicates maily EDTA, carbohydrates, phenol)</xs:documentation> </xs:annotation> </xs:element> <xs:element name="Concentration" type="dna:StringUnit" minOccurs="0"> <xs:annotation> <xs:documentation>DNA concentration value</xs:documentation> </xs:annotation> </xs:element> <xs:element name="Quality" minOccurs="0"> <xs:annotation> <xs:documentation>DNA quality estimation based on agarose gel electrophoresis (average fragment lenght of the DNA sample)</xs:documentation> </xs:annotation> <xs:simpleType> <xs:restriction base="xs:string"> <xs:enumeration value="low"/> <xs:enumeration value="medium"/> <xs:enumeration value="high"/> </xs:restriction> </xs:simpleType> </xs:element> <xs:element name="QualityCheckDate" type="xs:date" minOccurs="0"> <xs:annotation> <xs:documentation>Date when DNA quality parameters were determined</xs:documentation> </xs:annotation> </xs:element> <xs:element name="Images" minOccurs="0"> <xs:annotation> <xs:documentation>Container element for links to images of the DNA sample (e.g. agarose gel images)</xs:documentation> <xs:documentation>Container element for links to agarose gel images</xs:documentation> </xs:annotation> <xs:complexType> <xs:sequence> <xs:element name="FileURI" type="dna:StringType" maxOccurs="unbounded"> <xs:annotation> <xs:documentation>Link to an DNA sample image (e.g. agarose gel image) </xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> </xs:element> <xs:element name="BlockedUntil" type="xs:date" minOccurs="0"> <xs:annotation> <xs:documentation>Date until ordering of DNA samples is blocked</xs:documentation> </xs:annotation> </xs:element> <xs:element name="ProvidedBy" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Outside person or company which delivered or donated the DNA sample</xs:documentation> </xs:annotation> </xs:element> <xs:element name="Amplifications" minOccurs="0"> <xs:annotation> <xs:documentation>Container element for infomation of all amplifications</xs:documentation> </xs:annotation> <xs:complexType> <xs:sequence> <xs:element name="Amplification" type="dna:Amplification" maxOccurs="unbounded"> <xs:annotation> <xs:documentation>Container element for information related to an individual amplification</xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> </xs:element> </xs:sequence> </xs:complexType> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="Tissue" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Tissue from which DNA was extracted</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="Preservation" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Form of conservation or fixation in which the tissue was available for extraction</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="ExtractionStaff" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Person who carried out DNA extraction</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:date | ||
annotation |
|
||
source | <xs:element name="ExtractionDate" type="xs:date" minOccurs="0"> <xs:annotation> <xs:documentation>Date of DNA extraction</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="ExtractionMethod" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Method or extraction protocol applied</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="PurificationMethod" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Method or protocol used for secundary purification of already extracted genomic DNA</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="RatioOfAbsorbance260_280" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Ratio of absorbance at 260 nm and 280 nm used to assess the purity of DNA (mainly proteins, phenol and others)</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="RatioOfAbsorbance260_230" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Ratio of absorbance at 260 nm and 230 nm assessing DNA purity (mostly secundary measure, indicates maily EDTA, carbohydrates, phenol)</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||||||||||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||||||||||
type | StringUnit | ||||||||||
attributes |
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annotation |
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source | <xs:element name="Concentration" type="dna:StringUnit" minOccurs="0"> <xs:annotation> <xs:documentation>DNA concentration value</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||||||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||||||
type | restriction of xs:string | ||||||
facets |
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||||||
annotation |
|
||||||
source | <xs:element name="Quality" minOccurs="0"> <xs:annotation> <xs:documentation>DNA quality estimation based on agarose gel electrophoresis (average fragment lenght of the DNA sample)</xs:documentation> </xs:annotation> <xs:simpleType> <xs:restriction base="xs:string"> <xs:enumeration value="low"/> <xs:enumeration value="medium"/> <xs:enumeration value="high"/> </xs:restriction> </xs:simpleType> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:date | ||
annotation |
|
||
source | <xs:element name="QualityCheckDate" type="xs:date" minOccurs="0"> <xs:annotation> <xs:documentation>Date when DNA quality parameters were determined</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
children | FileURI | ||
annotation |
|
||
source | <xs:element name="Images" minOccurs="0"> <xs:annotation> <xs:documentation>Container element for links to images of the DNA sample (e.g. agarose gel images)</xs:documentation> <xs:documentation>Container element for links to agarose gel images</xs:documentation> </xs:annotation> <xs:complexType> <xs:sequence> <xs:element name="FileURI" type="dna:StringType" maxOccurs="unbounded"> <xs:annotation> <xs:documentation>Link to an DNA sample image (e.g. agarose gel image) </xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> </xs:element> |
diagram | |||||||||||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||||||||||
type | StringType | ||||||||||
attributes |
|
||||||||||
annotation |
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||||||||||
source | <xs:element name="FileURI" type="dna:StringType" maxOccurs="unbounded"> <xs:annotation> <xs:documentation>Link to an DNA sample image (e.g. agarose gel image) </xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:date | ||
annotation |
|
||
source | <xs:element name="BlockedUntil" type="xs:date" minOccurs="0"> <xs:annotation> <xs:documentation>Date until ordering of DNA samples is blocked</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="ProvidedBy" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Outside person or company which delivered or donated the DNA sample</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
children | Amplification | ||
annotation |
|
||
source | <xs:element name="Amplifications" minOccurs="0"> <xs:annotation> <xs:documentation>Container element for infomation of all amplifications</xs:documentation> </xs:annotation> <xs:complexType> <xs:sequence> <xs:element name="Amplification" type="dna:Amplification" maxOccurs="unbounded"> <xs:annotation> <xs:documentation>Container element for information related to an individual amplification</xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | Amplification | ||
children | AmplificationDate AmplificationStaff GeneticLocus PurificationMethod Sequencings AmplificationPrimers | ||
annotation |
|
||
source | <xs:element name="Amplification" type="dna:Amplification" maxOccurs="unbounded"> <xs:annotation> <xs:documentation>Container element for information related to an individual amplification</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
children | AmplificationDate AmplificationStaff GeneticLocus PurificationMethod Sequencings AmplificationPrimers | ||
used by |
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||
annotation |
|
||
source | <xs:complexType name="Amplification"> <xs:annotation> <xs:documentation>Container element for individual amplifications</xs:documentation> </xs:annotation> <xs:sequence> <xs:element name="AmplificationDate" type="xs:date" minOccurs="0"> <xs:annotation> <xs:documentation>Date when the amplification was carried out</xs:documentation> </xs:annotation> </xs:element> <xs:element name="AmplificationStaff" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Person who performed the amplification</xs:documentation> </xs:annotation> </xs:element> <xs:element name="GeneticLocus" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Genetic locus or DNA fragment amplified by PCR</xs:documentation> </xs:annotation> </xs:element> <xs:element name="PurificationMethod" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Method or protocol used to purify the PCR product</xs:documentation> </xs:annotation> </xs:element> <xs:element name="Sequencings" minOccurs="0"> <xs:annotation> <xs:documentation>Container element for all DNA sequencings (related to all sequences and sequencing runs of one fragment or locus)</xs:documentation> </xs:annotation> <xs:complexType> <xs:sequence> <xs:element name="Sequencing" type="dna:Sequencing" maxOccurs="unbounded"> <xs:annotation> <xs:documentation>Container element for all sequencing information related to a defined clone of a cloned fragment (contains only one element if the fragment was not cloned)</xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> </xs:element> <xs:element name="AmplificationPrimers" minOccurs="0"> <xs:annotation> <xs:documentation>Container element for amplification primers</xs:documentation> </xs:annotation> <xs:complexType> <xs:sequence> <xs:element name="AmplificationPrimerForward" type="dna:AmplificationPrimerForward" minOccurs="0"> <xs:annotation> <xs:documentation>Container element for information about the amplification forward primer</xs:documentation> </xs:annotation> </xs:element> <xs:element name="AmplificationPrimerReverse" type="dna:AmplificationPrimerReverse" minOccurs="0"> <xs:annotation> <xs:documentation>Container element for information about the amplification reverse primer</xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> </xs:element> </xs:sequence> </xs:complexType> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:date | ||
annotation |
|
||
source | <xs:element name="AmplificationDate" type="xs:date" minOccurs="0"> <xs:annotation> <xs:documentation>Date when the amplification was carried out</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="AmplificationStaff" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Person who performed the amplification</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="GeneticLocus" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Genetic locus or DNA fragment amplified by PCR</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="PurificationMethod" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Method or protocol used to purify the PCR product</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
children | Sequencing | ||
annotation |
|
||
source | <xs:element name="Sequencings" minOccurs="0"> <xs:annotation> <xs:documentation>Container element for all DNA sequencings (related to all sequences and sequencing runs of one fragment or locus)</xs:documentation> </xs:annotation> <xs:complexType> <xs:sequence> <xs:element name="Sequencing" type="dna:Sequencing" maxOccurs="unbounded"> <xs:annotation> <xs:documentation>Container element for all sequencing information related to a defined clone of a cloned fragment (contains only one element if the fragment was not cloned)</xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | Sequencing | ||
children | CloningDate CloningStaff CloningMethod CloneStrain SingleSequencings ConsensusSequence ConsensusSequenceLength ConsensusSequenceChromatogramFileURI BarcodeSequence GenBankNumber GenBankNumber-URI References | ||
annotation |
|
||
source | <xs:element name="Sequencing" type="dna:Sequencing" maxOccurs="unbounded"> <xs:annotation> <xs:documentation>Container element for all sequencing information related to a defined clone of a cloned fragment (contains only one element if the fragment was not cloned)</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
children | AmplificationPrimerForward AmplificationPrimerReverse | ||
annotation |
|
||
source | <xs:element name="AmplificationPrimers" minOccurs="0"> <xs:annotation> <xs:documentation>Container element for amplification primers</xs:documentation> </xs:annotation> <xs:complexType> <xs:sequence> <xs:element name="AmplificationPrimerForward" type="dna:AmplificationPrimerForward" minOccurs="0"> <xs:annotation> <xs:documentation>Container element for information about the amplification forward primer</xs:documentation> </xs:annotation> </xs:element> <xs:element name="AmplificationPrimerReverse" type="dna:AmplificationPrimerReverse" minOccurs="0"> <xs:annotation> <xs:documentation>Container element for information about the amplification reverse primer</xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | AmplificationPrimerForward | ||
children | PrimerName PrimerSequence PrimerReferenceCitation PrimerReferenceLink | ||
annotation |
|
||
source | <xs:element name="AmplificationPrimerForward" type="dna:AmplificationPrimerForward" minOccurs="0"> <xs:annotation> <xs:documentation>Container element for information about the amplification forward primer</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | AmplificationPrimerReverse | ||
children | PrimerName PrimerSequence PrimerReferenceCitation PrimerReferenceLink | ||
annotation |
|
||
source | <xs:element name="AmplificationPrimerReverse" type="dna:AmplificationPrimerReverse" minOccurs="0"> <xs:annotation> <xs:documentation>Container element for information about the amplification reverse primer</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
children | PrimerName PrimerSequence PrimerReferenceCitation PrimerReferenceLink | ||
used by |
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||
annotation |
|
||
source | <xs:complexType name="AmplificationPrimerForward"> <xs:annotation> <xs:documentation>Container element for information of the amplification forward primer</xs:documentation> </xs:annotation> <xs:sequence> <xs:element name="PrimerName" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Name of the forward primer</xs:documentation> </xs:annotation> </xs:element> <xs:element name="PrimerSequence" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>DNA sequence of the forward primer (5' to 3')</xs:documentation> </xs:annotation> </xs:element> <xs:element name="PrimerReferenceCitation" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>First reference of the forward primer</xs:documentation> </xs:annotation> </xs:element> <xs:element name="PrimerReferenceLink" type="xs:anyURI" minOccurs="0"> <xs:annotation> <xs:documentation>Link to the first reference of the forward primer</xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="PrimerName" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Name of the forward primer</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="PrimerSequence" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>DNA sequence of the forward primer (5' to 3')</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="PrimerReferenceCitation" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>First reference of the forward primer</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:anyURI | ||
annotation |
|
||
source | <xs:element name="PrimerReferenceLink" type="xs:anyURI" minOccurs="0"> <xs:annotation> <xs:documentation>Link to the first reference of the forward primer</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
children | PrimerName PrimerSequence PrimerReferenceCitation PrimerReferenceLink | ||
used by |
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||
annotation |
|
||
source | <xs:complexType name="AmplificationPrimerReverse"> <xs:annotation> <xs:documentation>Container element for information about the amplification reverse primer</xs:documentation> </xs:annotation> <xs:sequence> <xs:element name="PrimerName" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Name of the reverse primer</xs:documentation> </xs:annotation> </xs:element> <xs:element name="PrimerSequence" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>DNA sequence of the reverse primer (5' to 3')</xs:documentation> </xs:annotation> </xs:element> <xs:element name="PrimerReferenceCitation" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>First reference of the reverse primer</xs:documentation> </xs:annotation> </xs:element> <xs:element name="PrimerReferenceLink" type="xs:anyURI" minOccurs="0"> <xs:annotation> <xs:documentation>Link to the first reference of the reverse primer</xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="PrimerName" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Name of the reverse primer</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="PrimerSequence" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>DNA sequence of the reverse primer (5' to 3')</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="PrimerReferenceCitation" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>First reference of the reverse primer</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:anyURI | ||
annotation |
|
||
source | <xs:element name="PrimerReferenceLink" type="xs:anyURI" minOccurs="0"> <xs:annotation> <xs:documentation>Link to the first reference of the reverse primer</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
children | ReferenceCitation ReferenceURI | ||
used by |
|
||
annotation |
|
||
source | <xs:complexType name="Reference"> <xs:annotation> <xs:documentation>Container element for an reference to DNA sequences or the consensus sequence </xs:documentation> </xs:annotation> <xs:sequence> <xs:element name="ReferenceCitation" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Reference to DNA sequences or the consensus sequence</xs:documentation> </xs:annotation> </xs:element> <xs:element name="ReferenceURI" type="xs:anyURI" minOccurs="0"> <xs:annotation> <xs:documentation>Link to the reference for DNA sequences or the consensus sequence</xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="ReferenceCitation" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Reference to DNA sequences or the consensus sequence</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:anyURI | ||
annotation |
|
||
source | <xs:element name="ReferenceURI" type="xs:anyURI" minOccurs="0"> <xs:annotation> <xs:documentation>Link to the reference for DNA sequences or the consensus sequence</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
children | CloningDate CloningStaff CloningMethod CloneStrain SingleSequencings ConsensusSequence ConsensusSequenceLength ConsensusSequenceChromatogramFileURI BarcodeSequence GenBankNumber GenBankNumber-URI References | ||
used by |
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annotation |
|
||
source | <xs:complexType name="Sequencing"> <xs:annotation> <xs:documentation>Container element for DNA sequencings</xs:documentation> </xs:annotation> <xs:sequence> <xs:element name="CloningDate" type="xs:date" minOccurs="0"> <xs:annotation> <xs:documentation>Date when the DNA cloning was carried out</xs:documentation> </xs:annotation> </xs:element> <xs:element name="CloningStaff" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Person or company which performed DNA cloning</xs:documentation> </xs:annotation> </xs:element> <xs:element name="CloningMethod" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Method or protocol used for DNA cloning</xs:documentation> </xs:annotation> </xs:element> <xs:element name="CloneStrain" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Name of the individual DNA clone </xs:documentation> </xs:annotation> </xs:element> <xs:element name="SingleSequencings" minOccurs="0"> <xs:annotation> <xs:documentation>Container element for all individual DNA sequencings (related to all sequnecing runs of a defined clone of a cloned fragment)</xs:documentation> </xs:annotation> <xs:complexType> <xs:sequence> <xs:element name="SingleSequencing" type="dna:SingleSequencing" maxOccurs="unbounded"> <xs:annotation> <xs:documentation>Container element for information related to an individual sequencing (related to a unique sequencing run)</xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> </xs:element> <xs:element name="ConsensusSequence" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Consensus sequence derived from all individual sequences</xs:documentation> </xs:annotation> </xs:element> <xs:element name="ConsensusSequenceLength" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Length of the consensus sequence (number of base pairs)</xs:documentation> </xs:annotation> </xs:element> <xs:element name="ConsensusSequenceChromatogramFileURI" type="xs:anyURI" minOccurs="0"> <xs:annotation> <xs:documentation>Link to the chromatogram of the consensus sequence</xs:documentation> </xs:annotation> </xs:element> <xs:element name="BarcodeSequence" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>DNA Barcode sequence (part or 100% of the consensus sequence)</xs:documentation> </xs:annotation> </xs:element> <xs:element name="GenBankNumber" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Definite number or ID under which the DNA sequence is deposited in a public database (e.g. GenBank accession number)</xs:documentation> </xs:annotation> </xs:element> <xs:element name="GenBankNumber-URI" type="xs:anyURI" minOccurs="0"> <xs:annotation> <xs:documentation>Link to the related record in a public database (e.g. link to a GenBank record)</xs:documentation> </xs:annotation> </xs:element> <xs:element name="References" minOccurs="0"> <xs:annotation> <xs:documentation>Container element for references to DNA sequences or the consensus sequence</xs:documentation> </xs:annotation> <xs:complexType> <xs:sequence> <xs:element name="Reference" type="dna:Reference" maxOccurs="unbounded"> <xs:annotation> <xs:documentation>Container element for references to individual DNA sequences or the consensus sequence</xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> </xs:element> </xs:sequence> </xs:complexType> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:date | ||
annotation |
|
||
source | <xs:element name="CloningDate" type="xs:date" minOccurs="0"> <xs:annotation> <xs:documentation>Date when the DNA cloning was carried out</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="CloningStaff" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Person or company which performed DNA cloning</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="CloningMethod" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Method or protocol used for DNA cloning</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="CloneStrain" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Name of the individual DNA clone </xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
children | SingleSequencing | ||
annotation |
|
||
source | <xs:element name="SingleSequencings" minOccurs="0"> <xs:annotation> <xs:documentation>Container element for all individual DNA sequencings (related to all sequnecing runs of a defined clone of a cloned fragment)</xs:documentation> </xs:annotation> <xs:complexType> <xs:sequence> <xs:element name="SingleSequencing" type="dna:SingleSequencing" maxOccurs="unbounded"> <xs:annotation> <xs:documentation>Container element for information related to an individual sequencing (related to a unique sequencing run)</xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | SingleSequencing | ||
children | SequencingDate SequencingStaff SequencingMethod SingleSequence Chromatograms SequencingPrimers | ||
annotation |
|
||
source | <xs:element name="SingleSequencing" type="dna:SingleSequencing" maxOccurs="unbounded"> <xs:annotation> <xs:documentation>Container element for information related to an individual sequencing (related to a unique sequencing run)</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="ConsensusSequence" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Consensus sequence derived from all individual sequences</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="ConsensusSequenceLength" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Length of the consensus sequence (number of base pairs)</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:anyURI | ||
annotation |
|
||
source | <xs:element name="ConsensusSequenceChromatogramFileURI" type="xs:anyURI" minOccurs="0"> <xs:annotation> <xs:documentation>Link to the chromatogram of the consensus sequence</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="BarcodeSequence" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>DNA Barcode sequence (part or 100% of the consensus sequence)</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="GenBankNumber" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Definite number or ID under which the DNA sequence is deposited in a public database (e.g. GenBank accession number)</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:anyURI | ||
annotation |
|
||
source | <xs:element name="GenBankNumber-URI" type="xs:anyURI" minOccurs="0"> <xs:annotation> <xs:documentation>Link to the related record in a public database (e.g. link to a GenBank record)</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
children | Reference | ||
annotation |
|
||
source | <xs:element name="References" minOccurs="0"> <xs:annotation> <xs:documentation>Container element for references to DNA sequences or the consensus sequence</xs:documentation> </xs:annotation> <xs:complexType> <xs:sequence> <xs:element name="Reference" type="dna:Reference" maxOccurs="unbounded"> <xs:annotation> <xs:documentation>Container element for references to individual DNA sequences or the consensus sequence</xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | Reference | ||
children | ReferenceCitation ReferenceURI | ||
annotation |
|
||
source | <xs:element name="Reference" type="dna:Reference" maxOccurs="unbounded"> <xs:annotation> <xs:documentation>Container element for references to individual DNA sequences or the consensus sequence</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
children | PrimerSequence PrimerName PrimerReferenceCitation PrimerReferenceLink | ||
used by |
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||
annotation |
|
||
source | <xs:complexType name="SequencingPrimer"> <xs:annotation> <xs:documentation>Container element for information of a sequencing primer</xs:documentation> </xs:annotation> <xs:sequence> <xs:element name="PrimerSequence" type="dna:StringDirection" minOccurs="0"> <xs:annotation> <xs:documentation>DNA sequence of the sequencing primer (A,T,G,C; 5' to 3')</xs:documentation> </xs:annotation> </xs:element> <xs:element name="PrimerName" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Name of the sequencing primer</xs:documentation> </xs:annotation> </xs:element> <xs:element name="PrimerReferenceCitation" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>First reference of the sequencing primer</xs:documentation> </xs:annotation> </xs:element> <xs:element name="PrimerReferenceLink" type="xs:anyURI" minOccurs="0"> <xs:annotation> <xs:documentation>Link to the first reference of the sequencing primer</xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> |
diagram | |||||||||||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||||||||||
type | StringDirection | ||||||||||
attributes |
|
||||||||||
annotation |
|
||||||||||
source | <xs:element name="PrimerSequence" type="dna:StringDirection" minOccurs="0"> <xs:annotation> <xs:documentation>DNA sequence of the sequencing primer (A,T,G,C; 5' to 3')</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="PrimerName" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Name of the sequencing primer</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="PrimerReferenceCitation" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>First reference of the sequencing primer</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:anyURI | ||
annotation |
|
||
source | <xs:element name="PrimerReferenceLink" type="xs:anyURI" minOccurs="0"> <xs:annotation> <xs:documentation>Link to the first reference of the sequencing primer</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
children | SequencingDate SequencingStaff SequencingMethod SingleSequence Chromatograms SequencingPrimers | ||
used by |
|
||
annotation |
|
||
source | <xs:complexType name="SingleSequencing"> <xs:annotation> <xs:documentation>Container element for information on individual sequences</xs:documentation> </xs:annotation> <xs:sequence> <xs:element name="SequencingDate" type="xs:date" minOccurs="0"> <xs:annotation> <xs:documentation>Date when the DNA sequence was produced</xs:documentation> </xs:annotation> </xs:element> <xs:element name="SequencingStaff" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Person or company which performed the sequencing</xs:documentation> </xs:annotation> </xs:element> <xs:element name="SequencingMethod" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Method or protocol used to generate the DNA sequences</xs:documentation> </xs:annotation> </xs:element> <xs:element name="SingleSequence" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Sequence of the individual DNA sequence (A,T,G,C; 5' to 3')</xs:documentation> </xs:annotation> </xs:element> <xs:element name="Chromatograms" minOccurs="0"> <xs:annotation> <xs:documentation>Container element for chromatograms of an individual DNA sequence</xs:documentation> </xs:annotation> <xs:complexType> <xs:sequence> <xs:element name="ChromatogramFileURI" type="dna:StringDirection" maxOccurs="unbounded"> <xs:annotation> <xs:documentation>Link to the chromatogram of an individual DNA sequence</xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> </xs:element> <xs:element name="SequencingPrimers" minOccurs="0"> <xs:annotation> <xs:documentation>Container element for all sequencing primers</xs:documentation> </xs:annotation> <xs:complexType> <xs:sequence> <xs:element name="SequencingPrimer" type="dna:SequencingPrimer" maxOccurs="unbounded"> <xs:annotation> <xs:documentation>Container element for an individual sequencing primer</xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> </xs:element> </xs:sequence> </xs:complexType> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:date | ||
annotation |
|
||
source | <xs:element name="SequencingDate" type="xs:date" minOccurs="0"> <xs:annotation> <xs:documentation>Date when the DNA sequence was produced</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="SequencingStaff" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Person or company which performed the sequencing</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="SequencingMethod" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Method or protocol used to generate the DNA sequences</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | xs:string | ||
annotation |
|
||
source | <xs:element name="SingleSequence" type="xs:string" minOccurs="0"> <xs:annotation> <xs:documentation>Sequence of the individual DNA sequence (A,T,G,C; 5' to 3')</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
children | ChromatogramFileURI | ||
annotation |
|
||
source | <xs:element name="Chromatograms" minOccurs="0"> <xs:annotation> <xs:documentation>Container element for chromatograms of an individual DNA sequence</xs:documentation> </xs:annotation> <xs:complexType> <xs:sequence> <xs:element name="ChromatogramFileURI" type="dna:StringDirection" maxOccurs="unbounded"> <xs:annotation> <xs:documentation>Link to the chromatogram of an individual DNA sequence</xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> </xs:element> |
diagram | |||||||||||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||||||||||
type | StringDirection | ||||||||||
attributes |
|
||||||||||
annotation |
|
||||||||||
source | <xs:element name="ChromatogramFileURI" type="dna:StringDirection" maxOccurs="unbounded"> <xs:annotation> <xs:documentation>Link to the chromatogram of an individual DNA sequence</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
children | SequencingPrimer | ||
annotation |
|
||
source | <xs:element name="SequencingPrimers" minOccurs="0"> <xs:annotation> <xs:documentation>Container element for all sequencing primers</xs:documentation> </xs:annotation> <xs:complexType> <xs:sequence> <xs:element name="SequencingPrimer" type="dna:SequencingPrimer" maxOccurs="unbounded"> <xs:annotation> <xs:documentation>Container element for an individual sequencing primer</xs:documentation> </xs:annotation> </xs:element> </xs:sequence> </xs:complexType> </xs:element> |
diagram | |||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||
type | SequencingPrimer | ||
children | PrimerSequence PrimerName PrimerReferenceCitation PrimerReferenceLink | ||
annotation |
|
||
source | <xs:element name="SequencingPrimer" type="dna:SequencingPrimer" maxOccurs="unbounded"> <xs:annotation> <xs:documentation>Container element for an individual sequencing primer</xs:documentation> </xs:annotation> </xs:element> |
diagram | |||||||||||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||||||||||
type | extension of xs:string | ||||||||||
used by |
|
||||||||||
attributes |
|
||||||||||
annotation |
|
||||||||||
source | <xs:complexType name="StringDirection"> <xs:annotation> <xs:documentation>String, extended with direction attribute (e.g. 'forward' or 'reverse')</xs:documentation> </xs:annotation> <xs:simpleContent> <xs:extension base="xs:string"> <xs:attribute name="Direction" type="xs:string" use="optional"/> </xs:extension> </xs:simpleContent> </xs:complexType> |
diagram | |||||||||||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||||||||||
type | extension of xs:string | ||||||||||
used by |
|
||||||||||
attributes |
|
||||||||||
annotation |
|
||||||||||
source | <xs:complexType name="StringType"> <xs:annotation> <xs:documentation>String, extended with Type attribute</xs:documentation> </xs:annotation> <xs:simpleContent> <xs:extension base="xs:string"> <xs:attribute name="Type" type="xs:string" use="required"/> </xs:extension> </xs:simpleContent> </xs:complexType> |
diagram | |||||||||||
namespace | http://www.dnabank-network.org/schemas/ABCDDNA | ||||||||||
type | extension of xs:string | ||||||||||
used by |
|
||||||||||
attributes |
|
||||||||||
annotation |
|
||||||||||
source | <xs:complexType name="StringUnit"> <xs:annotation> <xs:documentation>String, extended with Unit attribute (e.g. ng/µl)</xs:documentation> </xs:annotation> <xs:simpleContent> <xs:extension base="xs:string"> <xs:attribute name="Unit" type="xs:string" use="required"/> </xs:extension> </xs:simpleContent> </xs:complexType> |